Simply Books/French Meadow
The French Meadow Cafe has long been one of Minneapolis' best stops for locally grown, organic food. Here's their "mission statement", from their website:
French Meadow Bakery & Café believes that meals prepared with the highest quality fresh, local & organic ingredients are the building blocks for a healthy & happy life.
An amazing bakery with a host of grocery store products to boot, the restaurant makes some of the best breakfasts in town. The pancakes (blueberry corn or strawberry almond) are a sure-fire hit, even with my kids, and my wife was especially liking the oatmeal last time we ate there, with apples, dried, fruit, and nuts.